intensity_normalization.cli package

Submodules

intensity_normalization.cli.coregister module

Co-registration CLI Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.coregister.coregister_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.fcm module

CLI for fuzzy c-means tissue mean normalization Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.fcm.fcm_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.histogram module

CLI for plotting histograms of a set of images Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.histogram.histogram_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.kde module

Kernel density estimate tissue mode normalization CLI Author: Jacob Reinhold (jcreinhold@gmail.com) Created on: 13 Oct 2021

intensity_normalization.cli.kde.kde_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.lsq module

Least-squares fit tissue mean normalization Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.lsq.lsq_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.nyul module

CLI for Nyul & Udupa normalization Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.nyul.nyul_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.preprocess module

CLI for MR image preprocessor Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.preprocess.preprocess_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.ravel module

CLI for RAVEL normalization Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.ravel.ravel_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.tissue_membership module

CLI for calculating tissue membership image Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.tissue_membership.tissue_membership_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.whitestripe module

CLI for WhiteStripe normalization method Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.whitestripe.whitestripe_main(args: Namespace | list[str] | None = None) → int

intensity_normalization.cli.zscore module

CLI for Z-Score normalization Author: Jacob Reinhold <jcreinhold@gmail.com> Created on: 13 Oct 2021

intensity_normalization.cli.zscore.zscore_main(args: Namespace | list[str] | None = None) → int

Module contents